IL_5MGP_142

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5MGP|1|a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_142 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.11

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5MGP|1|a|U|684
5MGP|1|a|G|685
5MGP|1|a|U|686
5MGP|1|a|A|687
5MGP|1|a|G|688
*
5MGP|1|a|C|699
5MGP|1|a|G|700
5MGP|1|a|U|701
5MGP|1|a|A|702
5MGP|1|a|G|703
5MGP|1|a|A|704
5MGP|1|a|G|705
5MGP|1|a|A|706

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11