IL_5MLC_032

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5MLC|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_032 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.0746

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

5MLC|1|A|C|1026
5MLC|1|A|U|1027
5MLC|1|A|A|1028
5MLC|1|A|A|1029
5MLC|1|A|G|1030
*
5MLC|1|A|C|1180
5MLC|1|A|G|1181
5MLC|1|A|A|1182
5MLC|1|A|A|1183
5MLC|1|A|G|1184

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 8

PSRP6, chloroplastic

Chain B

5S ribosomal RNA; 5S rRNA

Chain S

50S ribosomal protein L20, chloroplastic