IL_5MLC_033
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCCCUAAA*UG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MLC_033 not in the Motif Atlas
- Homologous match to IL_7A0S_034
- Geometric discrepancy: 0.1408
- The information below is about IL_7A0S_034
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
5MLC|1|A|C|1032
5MLC|1|A|C|1033
5MLC|1|A|C|1034
5MLC|1|A|C|1035
5MLC|1|A|U|1036
5MLC|1|A|A|1037
5MLC|1|A|A|1038
5MLC|1|A|A|1039
*
5MLC|1|A|U|1177
5MLC|1|A|G|1178
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 8
- PSRP6, chloroplastic
- Chain L
- 50S ribosomal protein L13, chloroplastic
- Chain S
- 50S ribosomal protein L20, chloroplastic
Coloring options: