IL_5MLC_044

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAGAAA*UGGAC

Length

13 nucleotides

Bulged bases

5MLC|1|A|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_044 not in the Motif Atlas

Geometric match to IL_3U4M_004

Geometric discrepancy: 0.1468

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5MLC|1|A|G|1229
5MLC|1|A|G|1230
5MLC|1|A|G|1231
5MLC|1|A|A|1232
5MLC|1|A|G|1233
5MLC|1|A|A|1234
5MLC|1|A|A|1235
5MLC|1|A|A|1236
*
5MLC|1|A|U|1255
5MLC|1|A|G|1256
5MLC|1|A|G|1257
5MLC|1|A|A|1258
5MLC|1|A|C|1259

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain S

50S ribosomal protein L20, chloroplastic