IL_5MMI_006
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAACUG*CUUAGUAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_006 not in the Motif Atlas
- Geometric match to IL_7A0S_006
- Geometric discrepancy: 0.0844
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
5MMI|1|A|C|173
5MMI|1|A|G|174
5MMI|1|A|A|175
5MMI|1|A|A|176
5MMI|1|A|C|177
5MMI|1|A|U|178
5MMI|1|A|G|179
*
5MMI|1|A|C|186
5MMI|1|A|U|187
5MMI|1|A|U|188
5MMI|1|A|A|189
5MMI|1|A|G|190
5MMI|1|A|U|191
5MMI|1|A|A|192
5MMI|1|A|G|193
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L35, chloroplastic
- Chain M
- plastid ribosomal protein uL15c
- Chain Y
- plastid ribosomal protein bL28c
Coloring options: