IL_5MMI_008

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CUGAC

Length

8 nucleotides

Bulged bases

5MMI|1|A|G|377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_008 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.3211

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5MMI|1|A|G|278
5MMI|1|A|A|279
5MMI|1|A|G|280
*
5MMI|1|A|C|375
5MMI|1|A|U|376
5MMI|1|A|G|377
5MMI|1|A|A|378
5MMI|1|A|C|379

Current chains

Chain A

23S ribosomal RNA

Nearby chains