IL_5MMI_018

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_018 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0976

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5MMI|1|A|U|616
5MMI|1|A|U|617
5MMI|1|A|A|618
5MMI|1|A|A|619
5MMI|1|A|G|620
*
5MMI|1|A|C|630
5MMI|1|A|G|631
5MMI|1|A|G|632
5MMI|1|A|A|633
5MMI|1|A|G|634

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

plastid ribosomal protein uL4c

Chain M

plastid ribosomal protein uL15c