IL_5MMI_026

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CACUC

Length

8 nucleotides

Bulged bases

5MMI|1|A|G|787, 5MMI|1|A|A|799, 5MMI|1|A|C|800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_026 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.0877

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

5MMI|1|A|G|786
5MMI|1|A|G|787
5MMI|1|A|G|788
*
5MMI|1|A|C|798
5MMI|1|A|A|799
5MMI|1|A|C|800
5MMI|1|A|U|801
5MMI|1|A|C|802

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34, chloroplastic

Chain C

50S ribosomal protein L2, chloroplastic

Chain T

50S ribosomal protein L22, chloroplastic