IL_5MMI_036

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCCUAAA*UG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_036 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.1306

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5MMI|1|A|C|1032
5MMI|1|A|C|1033
5MMI|1|A|C|1034
5MMI|1|A|C|1035
5MMI|1|A|U|1036
5MMI|1|A|A|1037
5MMI|1|A|A|1038
5MMI|1|A|A|1039
*
5MMI|1|A|U|1177
5MMI|1|A|G|1178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein 6, chloroplastic

Chain K

50S ribosomal protein L13, chloroplastic

Chain R

50S ribosomal protein L20, chloroplastic