IL_5MMI_043

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUG*CCACC

Length

10 nucleotides

Bulged bases

5MMI|1|A|U|1089

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_043 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.2334

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5MMI|1|A|G|1087
5MMI|1|A|U|1088
5MMI|1|A|U|1089
5MMI|1|A|U|1090
5MMI|1|A|G|1091
*
5MMI|1|A|C|1103
5MMI|1|A|C|1104
5MMI|1|A|A|1105
5MMI|1|A|C|1106
5MMI|1|A|C|1107

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11, chloroplastic

Chain N

50S ribosomal protein L16, chloroplastic