IL_5MMI_048

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

5MMI|1|A|U|1254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_048 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.321

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

5MMI|1|A|A|1236
5MMI|1|A|C|1237
*
5MMI|1|A|G|1253
5MMI|1|A|U|1254
5MMI|1|A|U|1255

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L20, chloroplastic

Chain T

50S ribosomal protein L22, chloroplastic