IL_5MMI_054

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_054 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.182

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5MMI|1|A|U|1378
5MMI|1|A|C|1379
5MMI|1|A|A|1380
5MMI|1|A|G|1381
5MMI|1|A|G|1382
*
5MMI|1|A|C|1391
5MMI|1|A|G|1392
5MMI|1|A|U|1393
5MMI|1|A|A|1394
5MMI|1|A|G|1395

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34, chloroplastic

Chain C

50S ribosomal protein L2, chloroplastic