IL_5MMI_066

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_066 not in the Motif Atlas

Geometric match to IL_7A0S_061

Geometric discrepancy: 0.062

The information below is about IL_7A0S_061

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

5MMI|1|A|G|1702
5MMI|1|A|G|1703
5MMI|1|A|A|1704
5MMI|1|A|A|1705
*
5MMI|1|A|U|2007
5MMI|1|A|C|2008

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

plastid ribosomal protein uL3c

Chain L

50S ribosomal protein L14, chloroplastic