IL_5MMI_074

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_074 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1491

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5MMI|1|A|U|1861
5MMI|1|A|C|1862
5MMI|1|A|A|1863
5MMI|1|A|A|1864
5MMI|1|A|G|1865
*
5MMI|1|A|C|1901
5MMI|1|A|G|1902
5MMI|1|A|A|1903
5MMI|1|A|A|1904
5MMI|1|A|G|1905

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2, chloroplastic

Chain H

plastid ribosomal protein bL9c