IL_5MMI_083

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUCC*GUAGA

Length

9 nucleotides

Bulged bases

5MMI|1|A|G|2255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_083 not in the Motif Atlas

Geometric match to IL_7RQB_011

Geometric discrepancy: 0.2248

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5MMI|1|A|U|2095
5MMI|1|A|U|2096
5MMI|1|A|C|2097
5MMI|1|A|C|2098
*
5MMI|1|A|G|2252
5MMI|1|A|U|2253
5MMI|1|A|A|2254
5MMI|1|A|G|2255
5MMI|1|A|A|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2, chloroplastic

Chain Y

plastid ribosomal protein bL28c