IL_5MMI_103

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_103 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1068

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5MMI|1|A|C|2669
5MMI|1|A|U|2670
5MMI|1|A|A|2671
5MMI|1|A|G|2672
5MMI|1|A|U|2673
5MMI|1|A|A|2674
5MMI|1|A|C|2675
*
5MMI|1|A|G|2680
5MMI|1|A|G|2681
5MMI|1|A|A|2682
5MMI|1|A|C|2683
5MMI|1|A|C|2684
5MMI|1|A|G|2685

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

plastid ribosomal protein uL6c