IL_5MMI_115
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAA*UGAG
- Length
- 7 nucleotides
- Bulged bases
- 5MMI|1|W|A|77
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_115 not in the Motif Atlas
- Geometric match to IL_4V9F_076
- Geometric discrepancy: 0.1084
- The information below is about IL_4V9F_076
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_87316.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5MMI|1|W|C|47
5MMI|1|W|A|48
5MMI|1|W|A|49
*
5MMI|1|W|U|75
5MMI|1|W|G|76
5MMI|1|W|A|77
5MMI|1|W|G|78
Current chains
- Chain W
- 4.5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- plastid ribosomal protein uL3c
- Chain O
- plastid ribosomal protein bL17c
- Chain Q
- 50S ribosomal protein L19, chloroplastic
Coloring options: