IL_5MMI_116
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGAAG*UGCAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_116 not in the Motif Atlas
- Geometric match to IL_4WF9_108
- Geometric discrepancy: 0.1512
- The information below is about IL_4WF9_108
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.1
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
5MMI|1|W|U|51
5MMI|1|W|G|52
5MMI|1|W|G|53
5MMI|1|W|A|54
5MMI|1|W|A|55
5MMI|1|W|G|56
*
5MMI|1|W|U|69
5MMI|1|W|G|70
5MMI|1|W|C|71
5MMI|1|W|A|72
5MMI|1|W|G|73
Current chains
- Chain W
- 4.5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- plastid ribosomal protein bL17c
- Chain Q
- 50S ribosomal protein L19, chloroplastic
Coloring options: