IL_5MMI_117
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGUAUUAAUCGACGAAAUGC*GAUUC
- Length
- 26 nucleotides
- Bulged bases
- 5MMI|1|A|A|71
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_117 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.3153
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
5MMI|1|A|G|55
5MMI|1|A|C|56
5MMI|1|A|G|57
5MMI|1|A|U|58
5MMI|1|A|A|59
5MMI|1|A|U|60
5MMI|1|A|U|61
5MMI|1|A|A|62
5MMI|1|A|A|63
5MMI|1|A|U|64
5MMI|1|A|C|65
5MMI|1|A|G|66
5MMI|1|A|A|67
5MMI|1|A|C|68
5MMI|1|A|G|69
5MMI|1|A|A|70
5MMI|1|A|A|71
5MMI|1|A|A|72
5MMI|1|A|U|73
5MMI|1|A|G|74
5MMI|1|A|C|75
*
5MMI|1|A|G|108
5MMI|1|A|A|109
5MMI|1|A|U|110
5MMI|1|A|U|111
5MMI|1|A|C|112
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L34, chloroplastic
- Chain U
- 50S ribosomal protein L23, chloroplastic
- Chain V
- plastid ribosomal protein uL24c
- Chain Z
- plastid ribosomal protein uL29c
Coloring options: