IL_5MMI_124

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUU*AAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_124 not in the Motif Atlas

Homologous match to IL_5J7L_327

Geometric discrepancy: 0.3759

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5MMI|1|A|U|2117
5MMI|1|A|U|2118
5MMI|1|A|U|2119
5MMI|1|A|U|2120
*
5MMI|1|A|A|2197
5MMI|1|A|A|2198
5MMI|1|A|G|2199
5MMI|1|A|A|2200

Current chains

Chain A

23S ribosomal RNA

Nearby chains