IL_5MRE_020

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAAAU*AUAA

Length

9 nucleotides

Bulged bases

5MRE|1|A|A|736

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_020 not in the Motif Atlas

Geometric match to IL_6CZR_141

Geometric discrepancy: 0.265

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5MRE|1|A|U|734
5MRE|1|A|A|735
5MRE|1|A|A|736
5MRE|1|A|A|737
5MRE|1|A|U|738
*
5MRE|1|A|A|858
5MRE|1|A|U|859
5MRE|1|A|A|860
5MRE|1|A|A|861

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 7

mL49

Chain U

uL30m