IL_5MRE_060

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

5MRE|1|A|A|1838, 5MRE|1|A|U|1844, 5MRE|1|A|C|1863

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_060 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.088

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5MRE|1|A|C|1834
5MRE|1|A|G|1835
5MRE|1|A|A|1836
5MRE|1|A|A|1837
5MRE|1|A|A|1838
5MRE|1|A|U|1839
5MRE|1|A|U|1840
5MRE|1|A|C|1841
5MRE|1|A|C|1842
5MRE|1|A|U|1843
5MRE|1|A|U|1844
5MRE|1|A|G|1845
*
5MRE|1|A|C|1861
5MRE|1|A|C|1862
5MRE|1|A|C|1863
5MRE|1|A|G|1864

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain B

uL2m

Chain aa

Small subunit ribosomal RNA; SSU rRNA