IL_5MRE_114

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUGCCAG*CGGUAACAC

Length

16 nucleotides

Bulged bases

5MRE|1|aa|A|646, 5MRE|1|aa|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_114 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1227

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5MRE|1|aa|G|629
5MRE|1|aa|U|630
5MRE|1|aa|G|631
5MRE|1|aa|C|632
5MRE|1|aa|C|633
5MRE|1|aa|A|634
5MRE|1|aa|G|635
*
5MRE|1|aa|C|642
5MRE|1|aa|G|643
5MRE|1|aa|G|644
5MRE|1|aa|U|645
5MRE|1|aa|A|646
5MRE|1|aa|A|647
5MRE|1|aa|C|648
5MRE|1|aa|A|649
5MRE|1|aa|C|650

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain CC

uS3m

Chain LL

uS12m

Chain XX

mS33