IL_5MRE_151

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUUU*AUUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_151 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.2319

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5MRE|1|aa|U|1516
5MRE|1|aa|U|1517
5MRE|1|aa|U|1518
5MRE|1|aa|U|1519
5MRE|1|aa|U|1520
*
5MRE|1|aa|A|1543
5MRE|1|aa|U|1544
5MRE|1|aa|U|1545
5MRE|1|aa|U|1546
5MRE|1|aa|A|1547

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 55

mS44