IL_5MRF_112

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

GUGCCAG*CGGUAACAC

Length

16 nucleotides

Bulged bases

5MRF|1|aa|A|646, 5MRF|1|aa|C|648, 5MRF|1|aa|A|649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_112 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.123

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5MRF|1|aa|G|629
5MRF|1|aa|U|630
5MRF|1|aa|G|631
5MRF|1|aa|C|632
5MRF|1|aa|C|633
5MRF|1|aa|A|634
5MRF|1|aa|G|635
*
5MRF|1|aa|C|642
5MRF|1|aa|G|643
5MRF|1|aa|G|644
5MRF|1|aa|U|645
5MRF|1|aa|A|646
5MRF|1|aa|A|647
5MRF|1|aa|C|648
5MRF|1|aa|A|649
5MRF|1|aa|C|650

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain CC

uS3m

Chain LL

uS12m

Chain XX

mS33