IL_5MRF_115

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

CGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_115 not in the Motif Atlas

Geometric match to IL_4LFB_023

Geometric discrepancy: 0.1103

The information below is about IL_4LFB_023

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5MRF|1|aa|C|689
5MRF|1|aa|G|690
5MRF|1|aa|U|691
5MRF|1|aa|A|692
5MRF|1|aa|G|693
*
5MRF|1|aa|U|822
5MRF|1|aa|G|823
5MRF|1|aa|A|824
5MRF|1|aa|G|825
5MRF|1|aa|G|826

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain LL

uS12m

Chain OO

uS15m

Chain QQ

uS17m