IL_5MY1_012

3D structure

PDB id

5MY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli expressome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5MY1|1|A|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MY1_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5MY1|1|A|G|147
5MY1|1|A|G|148
5MY1|1|A|A|149
5MY1|1|A|U|150
5MY1|1|A|A|151
5MY1|1|A|A|152
5MY1|1|A|C|153
*
5MY1|1|A|G|168
5MY1|1|A|C|169
5MY1|1|A|U|170
5MY1|1|A|A|171
5MY1|1|A|A|172
5MY1|1|A|U|173
5MY1|1|A|A|174
5MY1|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20