IL_5NCO_103

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5NCO|1|A|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_103 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0841

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5NCO|1|A|C|2636
5NCO|1|A|U|2637
5NCO|1|A|G|2638
5NCO|1|A|A|2639
5NCO|1|A|G|2640
*
5NCO|1|A|C|2774
5NCO|1|A|G|2775
5NCO|1|A|A|2776
5NCO|1|A|G|2777
5NCO|1|A|A|2778
5NCO|1|A|U|2779
5NCO|1|A|G|2780
5NCO|1|A|A|2781
5NCO|1|A|G|2782

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13