IL_5ND8_032

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5ND8|1|A|A|1200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_032 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.1358

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5ND8|1|A|C|1042
5ND8|1|A|U|1043
5ND8|1|A|A|1044
5ND8|1|A|A|1045
5ND8|1|A|G|1046
*
5ND8|1|A|C|1197
5ND8|1|A|G|1198
5ND8|1|A|A|1199
5ND8|1|A|A|1200
5ND8|1|A|G|1201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L30

Chain B

5S ribosomal RNA; 5S rRNA

Chain T

50S ribosomal protein L20