IL_5ND8_035
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 5ND8|1|A|A|1187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND8_035 not in the Motif Atlas
- Geometric match to IL_5J7L_280
- Geometric discrepancy: 0.1358
- The information below is about IL_5J7L_280
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.5
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
5ND8|1|A|U|1062
5ND8|1|A|U|1063
5ND8|1|A|A|1064
5ND8|1|A|A|1065
5ND8|1|A|G|1066
5ND8|1|A|U|1067
5ND8|1|A|G|1068
*
5ND8|1|A|C|1184
5ND8|1|A|U|1185
5ND8|1|A|A|1186
5ND8|1|A|A|1187
5ND8|1|A|A|1188
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain H
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L13
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