3D structure

PDB id
5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hibernating ribosome from Staphylococcus aureus (Unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUAAGUG*CUAAA
Length
12 nucleotides
Bulged bases
5ND8|1|A|A|1187
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5ND8_035 not in the Motif Atlas
Geometric match to IL_5J7L_280
Geometric discrepancy: 0.1358
The information below is about IL_5J7L_280
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

5ND8|1|A|U|1062
5ND8|1|A|U|1063
5ND8|1|A|A|1064
5ND8|1|A|A|1065
5ND8|1|A|G|1066
5ND8|1|A|U|1067
5ND8|1|A|G|1068
*
5ND8|1|A|C|1184
5ND8|1|A|U|1185
5ND8|1|A|A|1186
5ND8|1|A|A|1187
5ND8|1|A|A|1188

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain H
50S ribosomal protein L6
Chain M
50S ribosomal protein L13

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