IL_5ND8_043

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5ND8|1|A|U|1248, 5ND8|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_043 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2901

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

5ND8|1|A|C|1246
5ND8|1|A|G|1247
5ND8|1|A|U|1248
5ND8|1|A|U|1249
5ND8|1|A|G|1250
5ND8|1|A|A|1251
5ND8|1|A|A|1252
5ND8|1|A|G|1253
*
5ND8|1|A|U|1272
5ND8|1|A|G|1273
5ND8|1|A|G|1274
5ND8|1|A|A|1275
5ND8|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L20