IL_5ND8_165
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAG*CAAAUC
- Length
- 10 nucleotides
- Bulged bases
- 5ND8|1|a|A|1291
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND8_165 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.2137
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5ND8|1|a|G|1266
5ND8|1|a|C|1267
5ND8|1|a|A|1268
5ND8|1|a|G|1269
*
5ND8|1|a|C|1288
5ND8|1|a|A|1289
5ND8|1|a|A|1290
5ND8|1|a|A|1291
5ND8|1|a|U|1292
5ND8|1|a|C|1293
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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