IL_5ND9_098
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5ND9|1|A|U|2716, 5ND9|1|A|A|2717
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND9_098 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.1608
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
5ND9|1|A|U|2714
5ND9|1|A|G|2715
5ND9|1|A|U|2716
5ND9|1|A|A|2717
5ND9|1|A|C|2718
*
5ND9|1|A|G|2745
5ND9|1|A|G|2746
5ND9|1|A|U|2747
5ND9|1|A|A|2748
5ND9|1|A|G|2749
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain Q
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L19
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