IL_5NDG_059
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_059 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.0658
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5NDG|1|1|G|1444
5NDG|1|1|U|1445
5NDG|1|1|A|1446
5NDG|1|1|G|1447
5NDG|1|1|U|1448
5NDG|1|1|A|1449
5NDG|1|1|G|1450
*
5NDG|1|1|C|2354
5NDG|1|1|G|2355
5NDG|1|1|A|2356
5NDG|1|1|A|2357
5NDG|1|1|A|2358
5NDG|1|1|C|2359
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4-A
- Chain M7
- 60S ribosomal protein L17-A
Coloring options: