IL_5NDG_071
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 5NDG|1|1|U|1716, 5NDG|1|1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_071 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.0978
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDG|1|1|C|1711
5NDG|1|1|G|1712
5NDG|1|1|G|1713
5NDG|1|1|A|1714
5NDG|1|1|A|1715
5NDG|1|1|U|1716
5NDG|1|1|U|1717
*
5NDG|1|1|G|1727
5NDG|1|1|G|1728
5NDG|1|1|A|1729
5NDG|1|1|G|1730
5NDG|1|1|A|1731
5NDG|1|1|U|1732
5NDG|1|1|G|1733
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain M9
- 60S ribosomal protein L19-A
- Chain N7
- 60S ribosomal protein L27-A
- Chain O0
- 60S ribosomal protein L30
- Chain O4
- 60S ribosomal protein L34-A
- Chain Q3
- 60S ribosomal protein L43-A
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