IL_5NDG_325
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_325 not in the Motif Atlas
- Homologous match to IL_5TBW_099
- Geometric discrepancy: 0.0853
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5NDG|1|5|C|2666
5NDG|1|5|A|2667
5NDG|1|5|U|2668
*
5NDG|1|5|A|2686
5NDG|1|5|G|2687
5NDG|1|5|U|2688
5NDG|1|5|A|2689
5NDG|1|5|G|2690
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain l5
- 60S ribosomal protein L5
- Chain m1
- 60S ribosomal protein L11-A
- Chain n1
- 60S ribosomal protein L21-A
- Chain sM
- Suppressor protein STM1
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