IL_5NDJ_184
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 5NDJ|1|1G|U|885, 5NDJ|1|1G|C|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_184 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0838
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NDJ|1|1G|C|883
5NDJ|1|1G|A|884
5NDJ|1|1G|U|885
5NDJ|1|1G|C|886
5NDJ|1|1G|A|887
5NDJ|1|1G|G|888
*
5NDJ|1|1G|C|918
5NDJ|1|1G|G|919
5NDJ|1|1G|A|920
5NDJ|1|1G|C|921
5NDJ|1|1G|G|922
5NDJ|1|1G|A|923
5NDJ|1|1G|C|924
5NDJ|1|1G|G|925
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 3A
- 30S ribosomal protein S12
- Chain 8A
- 30S ribosomal protein S17
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