IL_5NDJ_219
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 5NDJ|1|1G|U|1884, 5NDJ|1|1G|A|1907, 5NDJ|1|1G|U|1908
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_219 not in the Motif Atlas
- Homologous match to IL_6CZR_161
- Geometric discrepancy: 0.3661
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDJ|1|1G|G|1882
5NDJ|1|1G|A|1883
5NDJ|1|1G|U|1884
5NDJ|1|1G|G|1885
*
5NDJ|1|1G|C|1904
5NDJ|1|1G|U|1905
5NDJ|1|1G|A|1906
5NDJ|1|1G|A|1907
5NDJ|1|1G|U|1908
5NDJ|1|1G|C|1909
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 22
- 30S ribosomal protein S3
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain 82
- 30S ribosomal protein S9
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