IL_5NDK_026
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_026 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.3856
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5NDK|1|13|U|1234
5NDK|1|13|G|1235
5NDK|1|13|A|1236
5NDK|1|13|A|1237
5NDK|1|13|A|1238
5NDK|1|13|G|1239
5NDK|1|13|A|1240
5NDK|1|13|C|1241
*
5NDK|1|13|G|1257
5NDK|1|13|G|1258
5NDK|1|13|G|1259
5NDK|1|13|G|1260
5NDK|1|13|A|1261
5NDK|1|13|G|1262
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3E
- 30S ribosomal protein S4
- Chain 7E
- 30S ribosomal protein S8
- Chain 7I
- 30S ribosomal protein S16
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