IL_5NDK_031
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5NDK|1|13|A|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_031 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.1085
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5NDK|1|13|G|1312
5NDK|1|13|A|1313
5NDK|1|13|G|1314
5NDK|1|13|U|1315
5NDK|1|13|A|1316
5NDK|1|13|G|1317
*
5NDK|1|13|C|1328
5NDK|1|13|G|1329
5NDK|1|13|C|1330
5NDK|1|13|A|1331
5NDK|1|13|G|1332
5NDK|1|13|A|1333
5NDK|1|13|U|1334
5NDK|1|13|A|1335
5NDK|1|13|C|1336
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2I
- 30S ribosomal protein S11
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