IL_5NDK_044
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 5NDK|1|13|U|1823
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_044 not in the Motif Atlas
- Geometric match to IL_6CZR_156
- Geometric discrepancy: 0.1079
- The information below is about IL_6CZR_156
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
5NDK|1|13|C|1688
5NDK|1|13|G|1689
*
5NDK|1|13|C|1822
5NDK|1|13|U|1823
5NDK|1|13|G|1824
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1I
- 30S ribosomal protein S10
- Chain 2E
- 30S ribosomal protein S3
- Chain 4E
- 30S ribosomal protein S5
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 8E
- 30S ribosomal protein S9
- Chain W1
- Transfer RNA; tRNA
- Chain Y1
- mRNA
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