IL_5NDK_046
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GUUGC*GGCACUC
- Length
- 12 nucleotides
- Bulged bases
- 5NDK|1|13|U|1753
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_046 not in the Motif Atlas
- Geometric match to IL_4LFB_048
- Geometric discrepancy: 0.2118
- The information below is about IL_4LFB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.1
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|13|G|1752
5NDK|1|13|U|1753
5NDK|1|13|U|1754
5NDK|1|13|G|1755
5NDK|1|13|C|1756
*
5NDK|1|13|G|1771
5NDK|1|13|G|1772
5NDK|1|13|C|1773
5NDK|1|13|A|1774
5NDK|1|13|C|1775
5NDK|1|13|U|1776
5NDK|1|13|C|1777
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1I
- 30S ribosomal protein S10
- Chain 8E
- 30S ribosomal protein S9
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