IL_5NDK_113

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDK_113 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.105

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5NDK|1|14|C|1466
5NDK|1|14|G|1467
5NDK|1|14|A|1468
5NDK|1|14|U|1469
5NDK|1|14|G|1470
*
5NDK|1|14|C|1627
5NDK|1|14|U|1628
5NDK|1|14|A|1629
5NDK|1|14|A|1630
5NDK|1|14|G|1631

Current chains

Chain 14

23S ribosomal RNA

Nearby chains