IL_5NDK_135
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5NDK|1|14|A|1963, 5NDK|1|14|U|1969, 5NDK|1|14|U|1988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_135 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.1166
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|14|C|1959
5NDK|1|14|G|1960
5NDK|1|14|A|1961
5NDK|1|14|A|1962
5NDK|1|14|A|1963
5NDK|1|14|U|1964
5NDK|1|14|U|1965
5NDK|1|14|C|1966
5NDK|1|14|C|1967
5NDK|1|14|U|1968
5NDK|1|14|U|1969
5NDK|1|14|G|1970
*
5NDK|1|14|C|1986
5NDK|1|14|C|1987
5NDK|1|14|U|1988
5NDK|1|14|G|1989
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain W4
- Transfer RNA; tRNA
Coloring options: