IL_5NDK_160

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5NDK|1|14|G|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDK_160 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.067

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5NDK|1|14|U|2651
5NDK|1|14|U|2652
5NDK|1|14|G|2653
5NDK|1|14|A|2654
5NDK|1|14|G|2655
*
5NDK|1|14|C|2790
5NDK|1|14|A|2791
5NDK|1|14|A|2792
5NDK|1|14|G|2793
5NDK|1|14|A|2794
5NDK|1|14|U|2795
5NDK|1|14|G|2796
5NDK|1|14|A|2797
5NDK|1|14|G|2798

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3