IL_5NDK_196

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5NDK|1|1G|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDK_196 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0682

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5NDK|1|1G|C|1198
5NDK|1|1G|G|1199
5NDK|1|1G|U|1200
5NDK|1|1G|A|1201
5NDK|1|1G|A|1202
5NDK|1|1G|A|1203
5NDK|1|1G|G|1204
*
5NDK|1|1G|C|1503
5NDK|1|1G|G|1504

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12

Chain 42

30S ribosomal protein S5

Chain 8A

30S ribosomal protein S17