IL_5NDK_211
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GCAC*GUUCCC
- Length
- 10 nucleotides
- Bulged bases
- 5NDK|1|1G|C|1557
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_211 not in the Motif Atlas
- Geometric match to IL_6CZR_149
- Geometric discrepancy: 0.1672
- The information below is about IL_6CZR_149
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93211.1
- Basepair signature
- cWW-cWS-cWW-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5NDK|1|1G|G|1556
5NDK|1|1G|C|1557
5NDK|1|1G|A|1558
5NDK|1|1G|C|1559
*
5NDK|1|1G|G|2007
5NDK|1|1G|U|2008
5NDK|1|1G|U|2009
5NDK|1|1G|C|2010
5NDK|1|1G|C|2011
5NDK|1|1G|C|2012
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 62
- 30S ribosomal protein S7
- Chain 82
- 30S ribosomal protein S9
- Chain V4
- Transfer RNA; tRNA
- Chain X4
- Transfer RNA; tRNA
- Chain Y4
- mRNA
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