IL_5NDK_220
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_220 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.0917
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDK|1|1G|U|1874
5NDK|1|1G|A|1875
5NDK|1|1G|C|1876
5NDK|1|1G|A|1877
5NDK|1|1G|A|1878
5NDK|1|1G|A|1879
5NDK|1|1G|G|1880
*
5NDK|1|1G|C|1911
5NDK|1|1G|A|1912
5NDK|1|1G|A|1913
5NDK|1|1G|A|1914
5NDK|1|1G|A|1915
5NDK|1|1G|A|1916
5NDK|1|1G|G|1917
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1B
- 30S ribosomal protein Thx
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain 62
- 30S ribosomal protein S7
- Chain 82
- 30S ribosomal protein S9
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