IL_5NDK_243

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

5NDK|1|1H|A|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDK_243 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1168

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5NDK|1|1H|C|305
5NDK|1|1H|G|306
5NDK|1|1H|A|307
5NDK|1|1H|A|308
5NDK|1|1H|U|309
*
5NDK|1|1H|A|382
5NDK|1|1H|U|383
5NDK|1|1H|A|384
5NDK|1|1H|G|385

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains