IL_5NDK_246
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 5NDK|1|1H|U|531, 5NDK|1|1H|G|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_246 not in the Motif Atlas
- Geometric match to IL_7RQB_014
- Geometric discrepancy: 0.0511
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
5NDK|1|1H|G|509
5NDK|1|1H|A|510
5NDK|1|1H|A|511
5NDK|1|1H|C|512
*
5NDK|1|1H|G|523
5NDK|1|1H|A|524
5NDK|1|1H|G|525
5NDK|1|1H|U|526
5NDK|1|1H|G|527
5NDK|1|1H|A|528
5NDK|1|1H|A|529
5NDK|1|1H|A|530
5NDK|1|1H|U|531
5NDK|1|1H|A|532
5NDK|1|1H|G|533
5NDK|1|1H|A|534
5NDK|1|1H|G|535
5NDK|1|1H|C|536
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain E8
- 50S ribosomal protein L22
- Chain G8
- 50S ribosomal protein L24
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